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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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[Homology]
Score
Msil_2933PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bid:Bind_2383 beta-lactamase domain protein. (556 aa)    
Predicted Functional Partners:
Msil_2932
TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: bid:Bind_2384 biotin--acetyl-CoA-carboxylase ligase.
      0.879
Msil_2934
KEGG: rsq:Rsph17025_0368 methylmalonyl-CoA epimerase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
       0.659
Msil_0818
PFAM: Polyprenyl synthetase; KEGG: bid:Bind_0423 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
    0.583
Msil_1115
PFAM: Polyprenyl synthetase; KEGG: bid:Bind_0855 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
    0.583
Msil_2049
PFAM: Polyprenyl synthetase; KEGG: mpo:Mpop_2849 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
    0.583
nuoN
Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.
  
    0.581
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
  
 0.536
rpsB
PFAM: ribosomal protein S2; KEGG: bid:Bind_2223 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
 
    0.511
nuoK
NADH-ubiquinone oxidoreductase chain 4L; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.
       0.497
Msil_2929
KEGG: bid:Bind_2387 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I).
       0.497
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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