Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_2976KEGG: rpe:RPE_3161 hypothetical protein. (792 aa)    
Predicted Functional Partners:
Msil_2977
PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: rpe:RPE_3163 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
  
 0.876
ackA-2
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
 0.829
Msil_2975
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cvi:CV_3743 enoyl-(acyl carrier protein) reductase.
  
    0.622
Msil_2705
PFAM: phosphate acetyl/butaryl transferase; KEGG: cti:RALTA_A1396 putative phosphate acetyl/butyryltransferase.
  
 0.542
Msil_2979
KEGG: rpa:RPA3309 hypothetical protein.
       0.476
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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