Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_2995TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: bid:Bind_0428 polyhydroxyalkonate synthesis repressor, PhaR. (198 aa)    
Predicted Functional Partners:
Msil_3287
TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: bid:Bind_1381 poly(R)-hydroxyalkanoic acid synthase, class I.
 
   
 0.838
Msil_1822
PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: met:M446_6101 poly-beta-hydroxybutyrate polymerase domain protein.
 
   
 0.818
Msil_0323
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: bid:Bind_3323 polyhydroxyalkanoate depolymerase, intracellular.
 
   
 0.703
Msil_0623
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: bid:Bind_1960 polyhydroxyalkanoate depolymerase, intracellular.
 
   
 0.654
Msil_2149
PFAM: alpha/beta hydrolase fold; PHB de-polymerase domain protein; KEGG: bvi:Bcep1808_7272 PHB de-polymerase domain-containing protein.
 
   
 0.583
Msil_2997
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bid:Bind_0426 acetoacetyl-CoA reductase.
 
   
 0.547
Msil_2996
KEGG: rec:RHECIAT_CH0004306 acetyl-CoA acetyltransferase protein; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
   
 0.534
Msil_0749
KEGG: bid:Bind_1669 hypothetical protein.
 
   
 0.408
Msil_1923
KEGG: bid:Bind_1669 hypothetical protein.
 
   
 0.404
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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