Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_3025KEGG: bid:Bind_3430 TRAP transporter solute receptor, TAXI family. (441 aa)    
Predicted Functional Partners:
Msil_2088
KEGG: bid:Bind_2076 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
  
     0.704
Msil_2378
KEGG: bja:blr3607 hypothetical protein.
  
     0.694
Msil_2154
KEGG: bid:Bind_3386 hypothetical protein.
  
     0.674
Msil_2862
KEGG: bid:Bind_1008 hypothetical protein.
  
     0.649
Msil_1316
PFAM: fatty acid hydroxylase; KEGG: bid:Bind_2044 fatty acid hydroxylase.
  
     0.631
Msil_1851
PFAM: transcription activator effector binding; KEGG: bid:Bind_3021 transcription activator effector binding.
  
     0.615
Msil_1573
KEGG: bid:Bind_0499 hypothetical protein.
  
     0.606
Msil_1618
KEGG: bid:Bind_0013 hypothetical protein.
  
     0.602
Msil_1895
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bid:Bind_1443 radical SAM domain protein.
  
     0.599
Msil_0902
KEGG: bid:Bind_1789 hypothetical protein.
  
     0.591
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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