Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Msil_3040Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: mes:Meso_1193 putative phage repressor. (211 aa)    
Predicted Functional Partners:
Msil_2378
KEGG: bja:blr3607 hypothetical protein.
  
   
 0.743
Msil_2371
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: bja:blr3608 hypothetical protein.
  
     0.621
Msil_3039
Hypothetical protein.
       0.542
Msil_3041
KEGG: bid:Bind_0631 hypothetical protein.
       0.539
Msil_3042
KEGG: bid:Bind_3173 hypothetical protein.
       0.539
Msil_0229
KEGG: mpo:Mpop_0840 conserved hypothetical protein; putative signal peptide.
  
     0.534
Msil_1405
KEGG: mpo:Mpop_3704 hypothetical protein.
  
     0.527
Msil_3349
KEGG: bid:Bind_0192 hypothetical protein.
  
     0.499
Msil_1011
KEGG: bid:Bind_3213 hypothetical protein.
  
     0.493
Msil_2797
KEGG: met:M446_1545 TRAP-type uncharacterized transport system periplasmic component-like protein.
  
     0.490
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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