Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_3121PFAM: protein of unknown function DUF323; KEGG: bja:bll5075 hypothetical protein. (334 aa)    
Predicted Functional Partners:
Msil_3123
PFAM: sulfatase; KEGG: smd:Smed_3791 sulfatase.
 
   0.904
Msil_3120
KEGG: xau:Xaut_3412 NapD-like protein.
 
     0.903
Msil_3122
KEGG: met:M446_6752 hypothetical protein.
 
     0.721
Msil_3501
PFAM: sulfatase; KEGG: bur:Bcep18194_B2021 sulfatase.
 
   0.595
Msil_1520
PFAM: protein of unknown function DUF323; KEGG: bba:Bd2607 hypothetical protein.
 
     0.557
Msil_2251
KEGG: bja:bll4740 nonspecific acid phosphatase precursor.
 
     0.555
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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