Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3147PFAM: cytochrome c class I; KEGG: xcv:XCV0711 putative secreted protein. (190 aa)    
Predicted Functional Partners:
Msil_3660
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: azc:AZC_4524 FixO protein.
  
 
 0.954
Msil_3659
KEGG: xau:Xaut_0459 cytochrome c oxidase, cbb3-type, subunit I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.953
Msil_3148
PFAM: Ankyrin; SMART: extracellular solute-binding protein family 3; KEGG: xcv:XCV0710 hypothetical protein.
 
   
 0.876
Msil_3801
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.868
Msil_3800
Cytochrome b/b6 domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.858
Msil_3661
PFAM: Cbb3-type cytochrome oxidase component; KEGG: azc:AZC_4525 FixQ protein.
  
 
 0.828
Msil_3149
TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: xac:XAC0648 methanol dehydrogenase heavy chain.
 
 
 0.807
Msil_3145
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: gbe:GbCGDNIH1_1915 surface antigen.
  
   0.800
Msil_3663
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: rpe:RPE_0014 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
  
 0.779
Msil_3146
KEGG: rpe:RPE_4682 hypothetical protein.
       0.762
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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