Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Msil_3166PFAM: transglutaminase domain protein; KEGG: mex:Mext_2618 transglutaminase domain protein. (286 aa)    
Predicted Functional Partners:
Msil_3678
PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: bid:Bind_3281 protein of unknown function DUF404.
 
  
 0.870
Msil_2301
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: bid:Bind_3052 protein of unknown function DUF404.
 
    0.805
Msil_2300
PFAM: protein of unknown function DUF403; KEGG: bid:Bind_3051 protein of unknown function DUF403.
 
  
 0.792
Msil_1408
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: gbe:GbCGDNIH1_0484 transglutaminase-like protein.
 
     0.777
Msil_3167
Hypothetical protein.
       0.773
Msil_0210
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bid:Bind_2470 transglutaminase domain protein.
 
     0.740
Msil_0622
KEGG: scl:sce6240 hypothetical protein.
  
     0.526
Msil_1753
KEGG: mrd:Mrad2831_2067 hypothetical protein.
  
     0.520
Msil_3165
PFAM: cytochrome c class I; KEGG: rpd:RPD_2197 cytochrome c, class I.
  
    0.492
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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