Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3202PFAM: cytochrome B561; KEGG: gdi:GDI1482 putative cytochrome b561. (197 aa)    
Predicted Functional Partners:
Msil_3201
PFAM: YceI family protein; KEGG: mrd:Mrad2831_5251 YceI family protein; Belongs to the UPF0312 family.
  
 0.994
Msil_3203
PFAM: YceI family protein; KEGG: mrd:Mrad2831_5253 YceI family protein; Belongs to the UPF0312 family.
 
  
 0.899
Msil_3200
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: gbe:GbCGDNIH1_1055 dioxygenase.
  
  
 0.787
Msil_3199
PFAM: OsmC family protein; KEGG: ppg:PputGB1_0104 OsmC family protein.
     
 0.561
Msil_3204
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rpc:RPC_2324 transcriptional regulator, LysR family.
       0.519
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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