Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3213KEGG: nha:Nham_2813 hypothetical protein. (158 aa)    
Predicted Functional Partners:
Msil_3212
PFAM: globin; KEGG: xau:Xaut_5029 globin.
       0.757
Msil_3214
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_1652 LysR family transcriptional regulator.
       0.554
Msil_3211
PFAM: 4-oxalocrotonate tautomerase; KEGG: aba:Acid345_4668 4-oxalocrotonate tautomerase.
       0.445
Msil_3215
PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: rpb:RPB_4505 pirin-like protein; Belongs to the pirin family.
       0.400
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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