Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Msil_3237KEGG: bid:Bind_3151 lipid A ABC exporter family, fused ATPase and inner membrane subunits; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase. (631 aa)    
Predicted Functional Partners:
Msil_2723
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Methyltransferase type 12; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_1113 beta-ketoacyl synthase.
  
 0.902
Msil_0140
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bid:Bind_1909 ABC transporter related.
  
 
0.703
Msil_0009
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bid:Bind_0009 ABC transporter related.
0.653
Msil_1002
Non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase and ligase; transferase hexapeptide repeat containing protein; KEGG: bid:Bind_1102 non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.610
Msil_1771
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: azc:AZC_3408 ATPase.
   
 0.610
Msil_0377
Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: hne:HNE_1798 deoxyribodipyrimidine photolyase family protein.
   
 
 0.605
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.600
Msil_1197
KEGG: rpt:Rpal_1749 CbbX protein; TIGRFAM: CbbX protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.
   
 0.597
Msil_2407
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cak:Caul_4410 ABC transporter related.
  
 0.588
Msil_1247
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_0846 amino acid adenylation domain protein.
  
 
 0.583
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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