Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3240TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: bid:Bind_3153 squalene synthase HpnC. (291 aa)    
Predicted Functional Partners:
Msil_3241
TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: bid:Bind_3154 squalene synthase HpnD.
  
 0.997
Msil_3242
TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; KEGG: bid:Bind_3155 squalene-associated FAD-dependent desaturase.
 
   
 0.958
Msil_3239
TIGRFAM: hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; NmrA family protein; Male sterility domain; KEGG: bpd:BURPS668_A3049 NAD-dependent epimerase/dehydratase family protein.
 
 
 0.875
Msil_3243
KEGG: bid:Bind_3156 squalene-hopene cyclase; TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.
 
  
 0.853
Msil_3244
TIGRFAM: hopanoid-associated phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: bid:Bind_3157 hypothetical protein.
 
   
 0.785
Msil_2282
KEGG: bid:Bind_3468 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.601
Msil_2029
TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: vha:VIBHAR_02162 phytoene dehydrogenase.
 
  
 0.577
Msil_3245
TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM domain protein; KEGG: bid:Bind_3158 hopanoid biosynthesis associated radical SAM protein HpnH.
 
   
 0.575
Msil_2048
TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rpc:RPC_1289 FAD dependent oxidoreductase.
 
  
 0.571
Msil_2723
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Methyltransferase type 12; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_1113 beta-ketoacyl synthase.
  
 0.548
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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