Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_3241TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: bid:Bind_3154 squalene synthase HpnD. (294 aa)    
Predicted Functional Partners:
Msil_3240
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: bid:Bind_3153 squalene synthase HpnC.
  
 0.997
Msil_3242
TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; KEGG: bid:Bind_3155 squalene-associated FAD-dependent desaturase.
  
 0.960
Msil_3239
TIGRFAM: hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; NmrA family protein; Male sterility domain; KEGG: bpd:BURPS668_A3049 NAD-dependent epimerase/dehydratase family protein.
 
 
 0.877
Msil_3243
KEGG: bid:Bind_3156 squalene-hopene cyclase; TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.
 
  
 0.849
Msil_2029
TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: vha:VIBHAR_02162 phytoene dehydrogenase.
 
  
 0.780
Msil_3244
TIGRFAM: hopanoid-associated phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: bid:Bind_3157 hypothetical protein.
 
   
 0.744
Msil_2048
TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rpc:RPC_1289 FAD dependent oxidoreductase.
 
  
 0.719
Msil_2282
KEGG: bid:Bind_3468 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.601
Msil_3246
TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: bid:Bind_3159 hopanoid biosynthesis associated RND transporter like protein HpnN.
 
     0.582
Msil_3245
TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM domain protein; KEGG: bid:Bind_3158 hopanoid biosynthesis associated radical SAM protein HpnH.
 
   
 0.578
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.