Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_3248PFAM: helicase domain protein; KEGG: bid:Bind_0074 helicase domain protein. (1139 aa)    
Predicted Functional Partners:
Msil_3249
Hypothetical protein.
       0.773
Msil_0833
PFAM: GcrA cell cycle regulator; KEGG: bid:Bind_3667 GcrA cell cycle regulator.
  
     0.699
Msil_1371
PFAM: transcription factor CarD; KEGG: bid:Bind_3138 transcriptional regulator, CarD family.
 
     0.677
Msil_1911
KEGG: bid:Bind_0827 hypothetical protein.
  
     0.604
Msil_0317
KEGG: bid:Bind_3426 cobalt chelatase, pCobT subunit; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit; SMART: von Willebrand factor type A.
  
     0.571
Msil_3247
KEGG: bid:Bind_3450 hypothetical protein.
       0.551
atpF
H+transporting two-sector ATPase B/B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.549
lysS
Lysine--tRNA ligase; PFAM: Lysyl-tRNA synthetase class 1c; KEGG: bid:Bind_1065 lysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.524
Msil_1235
PFAM: N-formylglutamate amidohydrolase; KEGG: bid:Bind_3643 N-formylglutamate amidohydrolase.
  
     0.496
Msil_1423
PFAM: Heparinase II/III family protein; KEGG: bid:Bind_2070 heparinase II/III family protein.
  
     0.485
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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