rplU protein (Methylocella silvestris) - STRING interaction network

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rplU

Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (125 aa)

Predicted Functional Partners:

rpmA

0.997

rplS

0.995

rplT

0.995

rplM

0.993

rplR

0.992

rplX

0.992

rplD

0.992

rpmF

0.992

rplI

0.992

rpsI

0.992

Your Current Organism:

Methylocella silvestris

NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplD	rplI	Msil_0579	Msil_0901	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein L9; Binds to the 23S rRNA.	0.991
rplD	rplM	Msil_0579	Msil_1873	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.996
rplD	rplR	Msil_0579	Msil_0564	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.997
rplD	rplS	Msil_0579	Msil_0638	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.991
rplD	rplT	Msil_0579	Msil_1836	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.992
rplD	rplU	Msil_0579	Msil_3283	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.992
rplD	rplX	Msil_0579	Msil_0569	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.998
rplD	rpmA	Msil_0579	Msil_3282	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	PFAM: ribosomal protein L27; KEGG: bid:Bind_0417 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.988
rplD	rpmF	Msil_0579	Msil_0820	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: bid:Bind_0425 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.977
rplD	rpsI	Msil_0579	Msil_1872	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	PFAM: ribosomal protein S9; KEGG: bid:Bind_1379 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.994
rplI	rplD	Msil_0901	Msil_0579	Ribosomal protein L9; Binds to the 23S rRNA.	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.991
rplI	rplM	Msil_0901	Msil_1873	Ribosomal protein L9; Binds to the 23S rRNA.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.992
rplI	rplR	Msil_0901	Msil_0564	Ribosomal protein L9; Binds to the 23S rRNA.	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.991
rplI	rplS	Msil_0901	Msil_0638	Ribosomal protein L9; Binds to the 23S rRNA.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.993
rplI	rplT	Msil_0901	Msil_1836	Ribosomal protein L9; Binds to the 23S rRNA.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.993
rplI	rplU	Msil_0901	Msil_3283	Ribosomal protein L9; Binds to the 23S rRNA.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.992
rplI	rplX	Msil_0901	Msil_0569	Ribosomal protein L9; Binds to the 23S rRNA.	Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.986
rplI	rpmA	Msil_0901	Msil_3282	Ribosomal protein L9; Binds to the 23S rRNA.	PFAM: ribosomal protein L27; KEGG: bid:Bind_0417 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.990
rplI	rpmF	Msil_0901	Msil_0820	Ribosomal protein L9; Binds to the 23S rRNA.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: bid:Bind_0425 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.974
rplI	rpsI	Msil_0901	Msil_1872	Ribosomal protein L9; Binds to the 23S rRNA.	PFAM: ribosomal protein S9; KEGG: bid:Bind_1379 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.991

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