Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Msil_3296PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: bid:Bind_0450 peptidase U6 penicillin-insensitive murein endopeptidase. (307 aa)    
Predicted Functional Partners:
Msil_2491
PFAM: protein of unknown function DUF81; KEGG: mlo:mlr1193 hypothetical protein.
 
    0.717
Msil_2156
PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: bid:Bind_3448 protein of unknown function DUF882.
  
     0.711
Msil_3518
PFAM: conserved hypothetical protein; KEGG: bid:Bind_2411 hypothetical protein.
  
     0.665
Msil_3519
PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: bid:Bind_2410 protein of unknown function DUF463 YcjX family protein.
  
     0.636
Msil_3297
KEGG: met:M446_0304 putative invasion protein B.
       0.628
Msil_3298
PFAM: protein of unknown function DUF423; KEGG: mrd:Mrad2831_3501 protein of unknown function DUF423.
 
     0.522
Msil_1593
PFAM: ribonuclease T2; KEGG: mrd:Mrad2831_2266 ribonuclease T2; Belongs to the RNase T2 family.
  
     0.509
Msil_1373
PFAM: protein of unknown function DUF1150; KEGG: bid:Bind_0513 protein of unknown function DUF1150.
  
     0.452
Msil_2492
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bid:Bind_0324 ErfK/YbiS/YcfS/YnhG family protein.
  
     0.438
Msil_0133
PFAM: CreA family protein; KEGG: bid:Bind_3676 CreA family protein.
  
     0.414
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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