Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3317PFAM: PepSY-associated TM helix domain protein; KEGG: mms:mma_3524 hypothetical protein. (446 aa)    
Predicted Functional Partners:
Msil_0468
PFAM: copper resistance protein CopC; KEGG: bbt:BBta_p0115 copper resistance protein C.
 
    0.698
Msil_3316
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 ECF subfamily RNA polymerase sigma-24 factor.
 
     0.590
Msil_3471
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mms:mma_0756 TonB-dependent siderophore receptor.
 
  
 0.491
Msil_3324
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mrd:Mrad2831_4099 TonB-dependent siderophore receptor.
 
  
 0.436
Msil_2103
PFAM: protein of unknown function DUF461; KEGG: mlo:mll3326 hypothetical protein.
  
    0.432
Msil_3315
Hypothetical protein; KEGG: smt:Smal_2187 anti-FecI sigma factor, FecR.
     
 0.406
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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