Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3324TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mrd:Mrad2831_4099 TonB-dependent siderophore receptor. (745 aa)    
Predicted Functional Partners:
Msil_3323
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: azc:AZC_3242 putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.836
Msil_3319
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: azc:AZC_3246 vicibactin biosynthesis non-ribosomal peptide synthase protein; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.768
Msil_0855
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: mxa:MXAN_4000 non-ribosomal peptide synthetase.
  
  
 0.729
Msil_1246
PFAM: Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bid:Bind_0847 condensation domain protein.
  
  
 0.729
Msil_1935
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: met:M446_3446 TonB-dependent heme/hemoglobin receptor family protein.
  
  
 0.603
Msil_1811
PFAM: iron permease FTR1; KEGG: oan:Oant_3859 iron permease FTR1.
   
  
 0.574
Msil_3316
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 ECF subfamily RNA polymerase sigma-24 factor.
  
  
 0.501
Msil_3471
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mms:mma_0756 TonB-dependent siderophore receptor.
 
  
0.500
Msil_1499
PFAM: isochorismatase hydrolase; KEGG: mag:amb1386 nicotinamidase-like amidase.
   
  
 0.454
Msil_3317
PFAM: PepSY-associated TM helix domain protein; KEGG: mms:mma_3524 hypothetical protein.
 
  
 0.436
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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