Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Msil_3333PFAM: Sel1 domain protein repeat-containing protein; KEGG: azc:AZC_1154 Sel1 repeat-containing protein. (258 aa)    
Predicted Functional Partners:
Msil_0312
PFAM: Sel1 domain protein repeat-containing protein; KEGG: bid:Bind_3521 Sel1 domain protein repeat-containing protein.
 
    
0.908
Msil_3332
TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: azc:AZC_1153 translation elongation factor.
    
  0.800
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
       0.776
Msil_0265
PFAM: Sel1 domain protein repeat-containing protein; KEGG: met:M446_3098 Sel1 domain protein repeat-containing protein.
  
     0.773
Msil_0907
PFAM: Sel1 domain protein repeat-containing protein; KEGG: bja:bll6024 hypothetical protein.
  
     0.773
Msil_0997
PFAM: Sel1 domain protein repeat-containing protein; KEGG: abc:ACICU_00110 TPR repeat, SEL1 subfamily protein.
  
     0.773
Msil_3331
KEGG: sme:SMa5014 hypothetical protein.
       0.773
Msil_1174
FOG: TPR repeat SEL1 subfamily protein-like protein; KEGG: aas:Aasi_0851 hypothetical protein.
  
     0.689
Msil_0025
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: bid:Bind_3655 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
 
 0.512
Msil_3335
PFAM: UvrD/REP helicase; KEGG: nha:Nham_3768 UvrD/REP helicase.
       0.463
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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