Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3343PFAM: Fusaric acid resistance protein conserved region; KEGG: met:M446_4864 fusaric acid resistance protein conserved region. (688 aa)    
Predicted Functional Partners:
Msil_3339
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:blr3854 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.844
Msil_3623
PFAM: NifQ family protein; KEGG: met:M446_3543 NifQ family protein.
  
    0.624
Msil_0357
KEGG: bid:Bind_1575 nitrogen-fixing NifU domain protein.
   
    0.562
Msil_3621
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
   
    0.562
Msil_3342
Hypothetical protein.
       0.553
Msil_2193
PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_B2119 predicted membrane fusion protein of efflux pump.
 
  
 0.480
Msil_0234
PFAM: secretion protein HlyD family protein; KEGG: reu:Reut_B4352 multidrug resistance protein MdtN.
 
  
 0.454
Msil_3338
PFAM: protein of unknown function DUF1656; KEGG: mrd:Mrad2831_2405 protein of unknown function DUF1656.
     
 0.441
Msil_3341
Hypothetical protein.
       0.401
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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