Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_3355KEGG: nha:Nham_4237 hypothetical protein. (197 aa)    
Predicted Functional Partners:
Msil_2154
KEGG: bid:Bind_3386 hypothetical protein.
  
     0.657
Msil_1388
KEGG: bid:Bind_3214 hypothetical protein.
  
     0.640
Msil_1389
Conserved hypothetical protein; KEGG: gvi:glr0868 unknown protein.
  
     0.636
Msil_3354
KEGG: nha:Nham_4237 hypothetical protein.
 
    
0.610
Msil_0077
KEGG: bid:Bind_2061 putative membrane transporter.
  
     0.599
Msil_2066
KEGG: rpc:RPC_1247 dienelactone hydrolase.
  
     0.591
Msil_2755
PFAM: Patatin; KEGG: bid:Bind_0164 patatin.
  
     0.589
Msil_3467
KEGG: bid:Bind_0369 TonB-dependent receptor.
  
     0.552
Msil_3638
KEGG: rpc:RPC_4465 hypothetical protein.
  
     0.465
Msil_3356
KEGG: rpb:RPB_1157 hypothetical protein.
       0.459
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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