Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Msil_3363KEGG: mlo:mlr5283 hypothetical protein. (210 aa)    
Predicted Functional Partners:
Msil_3364
PFAM: protein of unknown function DUF1486; Limonene-12-epoxide hydrolase; KEGG: mlo:mlr5282 hypothetical protein.
 
     0.702
Msil_3368
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:blr3992 transcriptional regulatory protein.
 
     0.692
Msil_0386
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:blr3992 transcriptional regulatory protein.
  
     0.620
Msil_3366
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mlr5280 glucose dehydrogenase.
 
     0.449
Msil_3367
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_B1096 glucose dehydrogenase.
 
     0.417
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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