Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Msil_3368Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:blr3992 transcriptional regulatory protein. (298 aa)    
Predicted Functional Partners:
Msil_3365
PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: mlo:mlr5281 hypothetical protein.
 
     0.699
Msil_3363
KEGG: mlo:mlr5283 hypothetical protein.
 
     0.692
Msil_0860
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll2775 transcriptional regulatory protein.
  
     0.620
Msil_3367
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_B1096 glucose dehydrogenase.
 
     0.596
Msil_3364
PFAM: protein of unknown function DUF1486; Limonene-12-epoxide hydrolase; KEGG: mlo:mlr5282 hypothetical protein.
 
     0.542
Msil_3366
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mlr5280 glucose dehydrogenase.
 
     0.535
Msil_0385
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll3991 putative oxidoreductase.
  
     0.504
Msil_3684
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rru:Rru_A2875 LysR family transcriptional regulator.
  
     0.479
Msil_1924
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gbe:GbCGDNIH1_1773 transcriptional regulators, LysR family.
  
     0.458
Msil_3370
PFAM: transposase IS3/IS911 family protein; KEGG: mrd:Mrad2831_6259 transposase IS3/IS911 family protein.
 
     0.458
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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