Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3402D-lactate dehydrogenase (cytochrome); PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: bja:blr6041 putative glycolate oxidase. (989 aa)    
Predicted Functional Partners:
Msil_2430
PFAM: protein of unknown function DUF162; KEGG: bid:Bind_0559 protein of unknown function DUF162.
 
 
 0.836
Msil_3403
PFAM: alanine racemase domain protein; KEGG: pla:Plav_0614 alanine racemase domain-containing protein.
  
    0.801
Msil_3400
Serine--glyoxylate transaminase; PFAM: aminotransferase class V; KEGG: bid:Bind_3524 serine--glyoxylate transaminase.
 
  
 0.785
Msil_2431
PFAM: protein of unknown function DUF162; KEGG: bid:Bind_0558 protein of unknown function DUF162.
 
 
 0.784
Msil_2751
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: hch:HCH_00108 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
  
 0.686
Msil_2987
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: pzu:PHZ_p0134 pyruvate:ferredoxin oxidoreductase.
     
 0.679
Msil_2428
L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
  
 0.658
Msil_3616
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: bbt:BBta_5872 protein FixA.
  
 
 0.635
Msil_3781
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: bid:Bind_1752 electron transfer flavoprotein alpha/beta-subunit.
  
 
 0.635
Msil_0083
PFAM: phosphate acetyl/butaryl transferase; malic protein domain protein; malic protein NAD-binding; KEGG: bid:Bind_2063 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), phosphate acetyltransferase.
  
  
 0.612
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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