Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3435PFAM: MaoC domain protein dehydratase; KEGG: swi:Swit_0956 MaoC domain protein dehydratase. (149 aa)    
Predicted Functional Partners:
Msil_3436
PFAM: HpcH/HpaI aldolase; KEGG: swi:Swit_3238 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.954
Msil_3434
Carbamoyl-phosphate synthase L chain ATP-binding; PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: swi:Swit_2163 carbamoyl-phosphate synthase L chain, ATP-binding.
 
  
 0.825
Msil_3433
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: swi:Swit_2162 propionyl-CoA carboxylase.
 
  
 0.789
Msil_2257
PFAM: HpcH/HpaI aldolase; KEGG: met:M446_2314 citrate (pro-3S)-lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.695
Msil_2723
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Methyltransferase type 12; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_1113 beta-ketoacyl synthase.
  
 0.649
Msil_1395
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pst:PSPTO_3517 multifunctional fatty acid oxidation complex subunit alpha.
  
 0.618
Msil_1742
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bid:Bind_1755 3-hydroxyacyl-CoA dehydrogenase NAD-binding.
  
 0.618
Msil_3437
KEGG: mpt:Mpe_B0503 hypothetical protein.
 
     0.578
Msil_1719
Citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; KEGG: mpt:Mpe_A3254 citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.575
Msil_3430
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_1758 alcohol dehydrogenase, zinc-binding protein.
 
    0.566
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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