Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3437KEGG: mpt:Mpe_B0503 hypothetical protein. (330 aa)    
Predicted Functional Partners:
Msil_3438
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mpt:Mpe_B0504 phosphatase-like protein.
 
     0.827
Msil_3441
KEGG: mpt:Mpe_B0535 hypothetical protein.
 
     0.615
Msil_3439
KEGG: mpt:Mpe_B0534 hypothetical protein.
       0.613
Msil_3435
PFAM: MaoC domain protein dehydratase; KEGG: swi:Swit_0956 MaoC domain protein dehydratase.
 
     0.578
Msil_3440
KEGG: mpt:Mpe_B0532 hypothetical protein.
       0.504
Msil_3442
PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: mpt:Mpe_B0506 pyruvate phosphate dikinase.
       0.504
Msil_3434
Carbamoyl-phosphate synthase L chain ATP-binding; PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: swi:Swit_2163 carbamoyl-phosphate synthase L chain, ATP-binding.
       0.486
Msil_3436
PFAM: HpcH/HpaI aldolase; KEGG: swi:Swit_3238 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.486
Msil_3443
Transcriptional regulator, CdaR; PFAM: GAF domain protein; KEGG: mpt:Mpe_B0495 transcriptional regulator, CdaR family.
 
     0.461
Msil_3462
KEGG: bur:Bcep18194_B0359 hypothetical protein.
  
     0.447
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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