Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3453TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_1607 drug resistance transporter, EmrB/QacA subfamily. (519 aa)    
Predicted Functional Partners:
Msil_3454
PFAM: secretion protein HlyD family protein; KEGG: met:M446_6591 secretion protein HlyD family protein.
 
 
 0.963
Msil_1815
PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_1624 HlyD family secretion protein.
 
 
 0.844
Msil_2433
PFAM: secretion protein HlyD family protein; KEGG: bid:Bind_2026 secretion protein HlyD family protein.
 
 
 0.838
Msil_0234
PFAM: secretion protein HlyD family protein; KEGG: reu:Reut_B4352 multidrug resistance protein MdtN.
  
 
 0.760
Msil_2193
PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_B2119 predicted membrane fusion protein of efflux pump.
  
 
 0.742
Msil_3339
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bja:blr3854 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.612
Msil_3455
PFAM: regulatory protein TetR; KEGG: bja:blr4685 transcriptional regulatory protein.
       0.499
Msil_3456
TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sme:SMc00956 probable exodeoxyribonuclease III protein.
       0.413
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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