Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3471TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mms:mma_0756 TonB-dependent siderophore receptor. (728 aa)    
Predicted Functional Partners:
Msil_3315
Hypothetical protein; KEGG: smt:Smal_2187 anti-FecI sigma factor, FecR.
  
 
 0.848
Msil_3473
PFAM: periplasmic binding protein; KEGG: rpa:RPA2308 periplasmic iron siderophore binding protein of ABC transporter.
 
   
 0.832
Msil_3472
Hypothetical protein.
       0.768
Msil_3141
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bid:Bind_0549 TonB-dependent receptor.
  
  
 0.699
Msil_3323
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: azc:AZC_3242 putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.638
Msil_1935
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: met:M446_3446 TonB-dependent heme/hemoglobin receptor family protein.
  
  
 0.633
Msil_0138
TIGRFAM: TonB family protein; KEGG: bid:Bind_2854 TonB family protein.
 
 
 0.628
Msil_1246
PFAM: Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bid:Bind_0847 condensation domain protein.
  
  
 0.582
Msil_1499
PFAM: isochorismatase hydrolase; KEGG: mag:amb1386 nicotinamidase-like amidase.
   
    0.558
Msil_0824
TIGRFAM: TonB family protein; KEGG: bid:Bind_0233 TonB family protein.
 
 
 0.553
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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