Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_3525KEGG: bid:Bind_2402 hypothetical protein. (165 aa)    
Predicted Functional Partners:
Msil_3526
KEGG: bid:Bind_2401 hypothetical protein.
 
     0.883
Msil_1771
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: azc:AZC_3408 ATPase.
  
 0.828
Msil_1765
KEGG: bbt:BBta_5892 hypothetical protein.
  
    0.776
Msil_3643
KEGG: rpc:RPC_4469 tetratricopeptide TPR_2.
  
     0.772
Msil_3640
PFAM: NifZ family protein; KEGG: rpc:RPC_4467 NifZ.
 
     0.766
Msil_3642
PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: azc:AZC_3418 hypothetical protein.
  
     0.757
Msil_1889
KEGG: pna:Pnap_1785 hypothetical protein.
  
     0.756
Msil_3649
KEGG: lch:Lcho_1428 hypothetical protein.
  
     0.755
Msil_3638
KEGG: rpc:RPC_4465 hypothetical protein.
  
     0.753
Msil_2310
TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: bid:Bind_2706 regulatory protein, FmdB family.
  
     0.737
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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