Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_3536KEGG: bid:Bind_3559 hypothetical protein. (350 aa)    
Predicted Functional Partners:
Msil_0734
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.771
Msil_1594
KEGG: bid:Bind_0659 putative exported protein of unknown function.
  
     0.766
Msil_2877
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: bid:Bind_0356 hypothetical protein.
  
     0.764
Msil_1669
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: bid:Bind_1638 peptidoglycan-binding domain 1 protein.
  
     0.754
Msil_0121
KEGG: bid:Bind_0880 hypothetical protein.
  
     0.738
Msil_2862
KEGG: bid:Bind_1008 hypothetical protein.
  
     0.736
Msil_0154
PFAM: protein of unknown function DUF1236; KEGG: met:M446_1280 protein of unknown function DUF1236.
  
     0.734
Msil_1879
KEGG: bid:Bind_0807 hypothetical protein.
  
     0.722
Msil_1806
PFAM: protein of unknown function DUF1236; KEGG: met:M446_1280 protein of unknown function DUF1236.
  
     0.710
Msil_0980
KEGG: bid:Bind_0671 NUDIX hydrolase.
  
     0.671
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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