Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_3548PFAM: Apolipoprotein A1/A4/E; KEGG: mrd:Mrad2831_1948 hypothetical protein. (2327 aa)    
Predicted Functional Partners:
Msil_0921
KEGG: bid:Bind_0271 TolA protein.
 
 
 
 0.820
Msil_2140
KEGG: bid:Bind_3505 conserved hypothetical protein; putative deoxyribonuclease.
  
 
 0.802
Msil_1006
KEGG: bja:bll7051 hypothetical protein.
 
  
 0.798
Msil_0448
KEGG: bid:Bind_1816 hypothetical protein.
  
     0.774
Msil_3828
PFAM: Invasion associated locus B family protein; KEGG: bid:Bind_2193 invasion associated locus B family protein.
  
     0.772
Msil_1857
KEGG: bid:Bind_3592 hypothetical protein.
  
     0.770
Msil_2528
KEGG: bid:Bind_0268 hypothetical protein.
  
     0.770
Msil_1218
KEGG: bid:Bind_0732 hypothetical protein.
  
     0.769
Msil_3428
KEGG: bja:bll3735 putative outer-membrane immunogenic protein precursor.
  
 
 
 0.768
Msil_3528
KEGG: bid:Bind_1985 hypothetical protein.
 
   
 0.768
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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