Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Msil_3561PFAM: Lytic transglycosylase catalytic; KEGG: bid:Bind_2746 lytic transglycosylase catalytic. (428 aa)    
Predicted Functional Partners:
Msil_3674
KEGG: met:M446_2079 hypothetical protein.
  
   
 0.589
Msil_1075
PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: bid:Bind_1657 protein of unknown function DUF900 hydrolase family protein.
  
     0.581
Msil_3518
PFAM: conserved hypothetical protein; KEGG: bid:Bind_2411 hypothetical protein.
  
     0.549
Msil_2492
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bid:Bind_0324 ErfK/YbiS/YcfS/YnhG family protein.
  
     0.541
Msil_3032
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bid:Bind_0453 ErfK/YbiS/YcfS/YnhG family protein.
  
     0.499
Msil_3712
KEGG: bid:Bind_3311 hypothetical protein.
  
    0.490
Msil_0890
Porin; PFAM: OmpA domain protein transmembrane region-containing protein; porin; KEGG: bid:Bind_2294 porin.
  
     0.483
Msil_0889
Porin; PFAM: porin; KEGG: bid:Bind_2294 porin.
  
     0.464
Msil_1041
PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: bms:BR0328 putative lipoprotein.
  
     0.457
Msil_1116
PFAM: cell wall hydrolase SleB; KEGG: bid:Bind_0856 cell wall hydrolase SleB.
  
   
 0.451
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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