Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3585KEGG: aba:Acid345_3747 putative cytochrome P460. (167 aa)    
Predicted Functional Partners:
Msil_2751
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: hch:HCH_00108 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
   
 
 0.756
Msil_3801
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.630
Msil_0862
PFAM: Cupin 2 conserved barrel domain protein; KEGG: bra:BRADO2447 putative signal peptide.
  
     0.572
Msil_3800
Cytochrome b/b6 domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.548
Msil_1242
PFAM: cytochrome c oxidase subunit III; KEGG: bid:Bind_0725 cytochrome c oxidase subunit III.
  
 
 0.495
Msil_1513
PFAM: cytochrome c oxidase subunit III; KEGG: pde:Pden_2480 cytochrome c oxidase, subunit III.
  
 
 0.495
Msil_3381
PFAM: cytochrome c oxidase subunit III; KEGG: bpd:BURPS668_0770 cytochrome c oxidase, subunit I/subunit III.
  
 
 0.495
Msil_3584
PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro01401 chloride peroxidase.
       0.486
Msil_3660
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: azc:AZC_4524 FixO protein.
  
 
 0.484
Msil_2190
KEGG: rle:RL2912 hypothetical protein.
 
     0.453
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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