Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3590PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bbt:BBta_6206 putative xanthine dehydrogenase YagT-like, iron-sulfur binding subunit. (179 aa)    
Predicted Functional Partners:
Msil_3588
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: met:M446_2671 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
 0.999
Msil_3589
PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: mex:Mext_0836 molybdopterin dehydrogenase FAD-binding.
 
 0.998
Msil_1276
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cti:RALTA_B1658 putative xanthine deshydrogenase.
 
 0.944
Msil_1133
PFAM: protein of unknown function DUF152; KEGG: bid:Bind_3533 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.
     
  0.900
gpt
Xanthine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
     
  0.900
Msil_2460
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: pmy:Pmen_2199 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
 0.887
Msil_3374
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: nha:Nham_1181 twin-arginine translocation pathway signal.
 
 0.876
Msil_0236
PFAM: protein of unknown function DUF182; KEGG: rsq:Rsph17025_0331 protein of unknown function DUF182.
 
  
 0.840
Msil_2987
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: pzu:PHZ_p0134 pyruvate:ferredoxin oxidoreductase.
  
  
 0.509
Msil_3591
KEGG: mes:Meso_1904 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.451
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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