Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3594PFAM: LmbE family protein; KEGG: mpo:Mpop_1164 LmbE family protein. (246 aa)    
Predicted Functional Partners:
Msil_3595
PFAM: NodS family protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: mpo:Mpop_4304 methyltransferase type 12.
     0.995
Msil_3593
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mpo:Mpop_0138 cyclic nucleotide-binding protein.
 
    0.954
Msil_3596
PFAM: glycosyl transferase family 2; KEGG: mex:Mext_4212 glycosyl transferase family 2.
 
    0.811
Msil_3718
KEGG: mex:Mext_2588 hypothetical protein.
  
     0.570
cysS
KEGG: bid:Bind_1915 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.438
Msil_2129
PFAM: NAD-dependent epimerase/dehydratase; KEGG: mrd:Mrad2831_1079 NAD-dependent epimerase/dehydratase.
 
    0.435
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
  
 0.433
Msil_1996
PFAM: glycosyl transferase group 1; KEGG: azc:AZC_0068 glycosyltransferase.
 
  
 0.432
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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