Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3604PFAM: flavin-containing monooxygenase FMO; KEGG: gbe:GbCGDNIH1_1825 dimethylaniline monooxygenase (N-oxide forming). (451 aa)    
Predicted Functional Partners:
Msil_3603
PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: xau:Xaut_3184 glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family.
 
  
 0.924
Msil_3607
KEGG: xau:Xaut_3182 hypothetical protein.
 
     0.825
Msil_3609
KEGG: xau:Xaut_3180 hypothetical protein.
 
     0.821
Msil_3605
PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: xau:Xaut_0923 glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family.
 
    0.791
Msil_3608
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: xau:Xaut_3181 ferredoxin.
 
     0.746
Msil_2634
PFAM: ferredoxin-dependent glutamate synthase; KEGG: mfa:Mfla_0459 glutamate synthase (NADPH) GltB2 subunit; Belongs to the glutamate synthase family.
 
     0.719
Msil_2633
KEGG: mpo:Mpop_1574 glutamate synthase alpha subunit domain protein.
 
     0.711
Msil_2632
PFAM: glutamine amidotransferase class-II; KEGG: azc:AZC_1502 amidophosphoribosyltransferase.
 
     0.706
Msil_3606
PFAM: amino acid permease-associated region; KEGG: xau:Xaut_0922 amino acid permease-associated region.
 
     0.675
Msil_2625
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bbt:BBta_1941 transcriptional regulator.
 
     0.559
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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