Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3606PFAM: amino acid permease-associated region; KEGG: xau:Xaut_0922 amino acid permease-associated region. (571 aa)    
Predicted Functional Partners:
Msil_3603
PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: xau:Xaut_3184 glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family.
 
  
 0.899
Msil_3607
KEGG: xau:Xaut_3182 hypothetical protein.
 
     0.785
Msil_2628
PFAM: amino acid permease-associated region; KEGG: mpo:Mpop_0216 amino acid permease-associated region.
  
     0.740
Msil_3605
PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: xau:Xaut_0923 glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family.
 
    0.700
Msil_3609
KEGG: xau:Xaut_3180 hypothetical protein.
 
     0.690
Msil_3604
PFAM: flavin-containing monooxygenase FMO; KEGG: gbe:GbCGDNIH1_1825 dimethylaniline monooxygenase (N-oxide forming).
 
     0.675
Msil_3602
PFAM: conserved hypothetical protein; KEGG: azc:AZC_4205 hypothetical protein.
 
     0.503
Msil_3320
KEGG: azc:AZC_3245 putative siderophore biosynthesis protein.
  
  
 0.438
Msil_3608
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: xau:Xaut_3181 ferredoxin.
 
     0.432
Msil_1350
KEGG: bpl:BURPS1106A_A2411 hypothetical protein.
  
     0.404
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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