Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3734KEGG: lch:Lcho_0850 hypothetical protein. (132 aa)    
Predicted Functional Partners:
Msil_3735
PFAM: extracellular solute-binding protein family 3; KEGG: bra:BRADO0121 hypothetical protein.
 
     0.877
Msil_2751
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: hch:HCH_00108 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
   
 
 0.756
Msil_3733
PFAM: Pyrrolo-quinoline quinone; KEGG: azo:azo3865 putative quinoprotein ethanol dehydrogenase.
 
   0.721
Msil_3801
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.630
Msil_3800
Cytochrome b/b6 domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.548
Msil_1242
PFAM: cytochrome c oxidase subunit III; KEGG: bid:Bind_0725 cytochrome c oxidase subunit III.
  
 
 0.495
Msil_1513
PFAM: cytochrome c oxidase subunit III; KEGG: pde:Pden_2480 cytochrome c oxidase, subunit III.
  
 
 0.495
Msil_3381
PFAM: cytochrome c oxidase subunit III; KEGG: bpd:BURPS668_0770 cytochrome c oxidase, subunit I/subunit III.
  
 
 0.495
Msil_3736
KEGG: xau:Xaut_4178 hypothetical protein.
       0.485
Msil_3737
PFAM: Chromate transporter; KEGG: xau:Xaut_4177 chromate transporter.
       0.485
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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