Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Msil_3760TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: npu:Npun_F0374 hydrogenase maturation protease. (158 aa)    
Predicted Functional Partners:
Msil_3763
PFAM: nickel-dependent hydrogenase large subunit; KEGG: bbt:BBta_0461 uptake hydrogenase large subunit.
 
 
 0.927
Msil_3758
KEGG: bbt:BBta_0466 hypothetical protein.
 
     0.896
Msil_3764
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: bbt:BBta_0460 uptake hydrogenase accessory protein HupU.
 
  
 0.894
Msil_3755
PFAM: nitrogen-fixing NifU domain protein; Rieske [2Fe-2S] domain protein; KEGG: bbt:BBta_0469 putative nitrogen-fixing NifU, Rieske (2Fe-2S) region.
 
     0.877
Msil_3754
PFAM: NHL repeat containing protein; KEGG: bbt:BBta_0470 hypothetical protein.
 
     0.870
Msil_3759
KEGG: sal:Sala_3202 hypothetical protein.
       0.810
Msil_3761
KEGG: bbt:BBta_0463 hypothetical protein.
       0.785
Msil_3752
TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: ter:Tery_0794 hydrogenase assembly chaperone HypC/HupF.
 
  
 0.767
Msil_2615
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bra:BRADO6813 putative NADH dehydrogenase FAD-containing subunit transmembrane protein.
    
   0.692
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
    
   0.692
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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