Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3772PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: fra:Francci3_0863 assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (708 aa)    
Predicted Functional Partners:
Msil_3774
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: scl:sce3488 nitrite reductase.
 
 0.993
Msil_3771
PFAM: major facilitator superfamily MFS_1; KEGG: azo:azo1288 putative nitrate transporter.
 
 
 0.985
Msil_3775
PFAM: Rieske [2Fe-2S] domain protein; KEGG: scl:sce3489 nitrite reductase small subunit, probable.
 
  
 0.979
Msil_3773
KEGG: scl:sce3487 hypothetical protein.
     0.976
Msil_1784
FAD-binding domain protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; Fe-S cluster domain protein; KEGG: rpe:RPE_1259 sulfite reductase.
 
 
 0.957
Msil_2751
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: hch:HCH_00108 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
  
 
 0.935
Msil_1785
TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: rpt:Rpal_4231 precorrin-3B synthase.
 
  
 0.922
Msil_1512
TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: hne:HNE_1559 nitrite extrusion protein.
  
 
 0.911
Msil_1510
TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: azc:AZC_1425 nitrate reductase alpha subunit protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
0.906
Msil_1507
KEGG: met:M446_5681 respiratory nitrate reductase, gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit.
     
 0.904
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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