Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_3774TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: scl:sce3488 nitrite reductase. (813 aa)    
Predicted Functional Partners:
Msil_3775
PFAM: Rieske [2Fe-2S] domain protein; KEGG: scl:sce3489 nitrite reductase small subunit, probable.
 
 
 0.996
Msil_3772
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: fra:Francci3_0863 assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.993
Msil_3771
PFAM: major facilitator superfamily MFS_1; KEGG: azo:azo1288 putative nitrate transporter.
 
 
 0.987
Msil_1510
TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: azc:AZC_1425 nitrate reductase alpha subunit protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.953
Msil_1509
TIGRFAM: nitrate reductase, beta subunit; KEGG: mrd:Mrad2831_2591 nitrate reductase, beta subunit.
  
 
 0.934
Msil_1512
TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: hne:HNE_1559 nitrite extrusion protein.
 
 
 0.930
Msil_1507
KEGG: met:M446_5681 respiratory nitrate reductase, gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit.
  
 
 0.923
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
   
 
 0.906
Msil_0426
Glutamate--ammonia ligase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: mrd:Mrad2831_5128 glutamate--ammonia ligase.
    
 0.905
Msil_0427
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: bid:Bind_1216 glutamine synthetase, type I.
    
 0.905
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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