Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_3880PFAM: protein of unknown function DUF459; KEGG: bid:Bind_3055 protein of unknown function DUF459. (409 aa)    
Predicted Functional Partners:
Msil_1090
PFAM: conserved hypothetical protein; KEGG: bid:Bind_0715 hypothetical protein.
  
     0.772
Msil_2528
KEGG: bid:Bind_0268 hypothetical protein.
  
     0.770
Msil_0983
KEGG: bid:Bind_0924 hypothetical protein.
  
     0.768
Msil_1664
KEGG: bid:Bind_1633 hypothetical protein.
  
     0.768
Msil_2304
KEGG: rpb:RPB_3925 hypothetical protein.
  
     0.766
Msil_0448
KEGG: bid:Bind_1816 hypothetical protein.
  
     0.765
Msil_1236
PFAM: Invasion associated locus B family protein; KEGG: bid:Bind_0731 invasion associated locus B family protein.
  
     0.746
Msil_3548
PFAM: Apolipoprotein A1/A4/E; KEGG: mrd:Mrad2831_1948 hypothetical protein.
  
     0.745
Msil_1857
KEGG: bid:Bind_3592 hypothetical protein.
  
     0.734
Msil_1218
KEGG: bid:Bind_0732 hypothetical protein.
  
     0.715
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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