STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msil_3906PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; protein of unknown function DUF1205; KEGG: bja:bll2692 putative glycosyltransferase. (449 aa)    
Predicted Functional Partners:
Msil_2723
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Methyltransferase type 12; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_1113 beta-ketoacyl synthase.
  
  
 0.572
Msil_1247
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_0846 amino acid adenylation domain protein.
  
  
 0.523
Msil_0855
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: mxa:MXAN_4000 non-ribosomal peptide synthetase.
     
 0.501
Msil_1246
PFAM: Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bid:Bind_0847 condensation domain protein.
     
 0.501
Msil_3319
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: azc:AZC_3246 vicibactin biosynthesis non-ribosomal peptide synthase protein; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.501
Msil_2129
PFAM: NAD-dependent epimerase/dehydratase; KEGG: mrd:Mrad2831_1079 NAD-dependent epimerase/dehydratase.
 
  
 0.488
Msil_1322
KEGG: rpd:RPD_1710 hypothetical protein.
  
     0.464
Msil_0869
PFAM: 2OG-Fe(II) oxygenase; KEGG: pzu:PHZ_c3220 DNA alkylation damage repair protein AlkB.
  
     0.462
Msil_0326
PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: nar:Saro_3574 glutathione-dependent formaldehyde-activating, GFA.
  
     0.408
Msil_2276
KEGG: mlo:mll4584 hypothetical protein.
  
    0.404
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.