Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ANL57591.1 | nusA | AMC85_CH00148 | AMC85_CH00156 | Protein involved in methyltransferase activity and methylation; Belongs to the methyltransferase superfamily. | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | 0.593 |
| ANL57591.1 | nusG | AMC85_CH00148 | AMC85_CH01735 | Protein involved in methyltransferase activity and methylation; Belongs to the methyltransferase superfamily. | Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination. | 0.535 |
| ANL57591.1 | obg | AMC85_CH00148 | AMC85_CH04342 | Protein involved in methyltransferase activity and methylation; Belongs to the methyltransferase superfamily. | GTPase protein Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.699 |
| ANL57591.1 | pnp | AMC85_CH00148 | AMC85_CH00149 | Protein involved in methyltransferase activity and methylation; Belongs to the methyltransferase superfamily. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.583 |
| ANL57591.1 | rplA | AMC85_CH00148 | AMC85_CH01737 | Protein involved in methyltransferase activity and methylation; Belongs to the methyltransferase superfamily. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.581 |
| ANL57591.1 | rplL | AMC85_CH00148 | AMC85_CH01740 | Protein involved in methyltransferase activity and methylation; Belongs to the methyltransferase superfamily. | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.498 |
| ANL57591.1 | rpoB | AMC85_CH00148 | AMC85_CH01741 | Protein involved in methyltransferase activity and methylation; Belongs to the methyltransferase superfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.564 |
| ANL57591.1 | tdk | AMC85_CH00148 | AMC85_CH03232 | Protein involved in methyltransferase activity and methylation; Belongs to the methyltransferase superfamily. | Protein involved in thymidine kinase activity and ATP binding. | 0.532 |
| ANL57591.1 | trmD | AMC85_CH00148 | AMC85_CH04223 | Protein involved in methyltransferase activity and methylation; Belongs to the methyltransferase superfamily. | tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.498 |
| ANL57591.1 | uppS | AMC85_CH00148 | AMC85_CH02038 | Protein involved in methyltransferase activity and methylation; Belongs to the methyltransferase superfamily. | Undecaprenyl pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.501 |
| nusA | ANL57591.1 | AMC85_CH00156 | AMC85_CH00148 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | Protein involved in methyltransferase activity and methylation; Belongs to the methyltransferase superfamily. | 0.593 |
| nusA | nusG | AMC85_CH00156 | AMC85_CH01735 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination. | 0.995 |
| nusA | pnp | AMC85_CH00156 | AMC85_CH00149 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.949 |
| nusA | rplA | AMC85_CH00156 | AMC85_CH01737 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.948 |
| nusA | rplL | AMC85_CH00156 | AMC85_CH01740 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.861 |
| nusA | rpoB | AMC85_CH00156 | AMC85_CH01741 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
| nusA | trmD | AMC85_CH00156 | AMC85_CH04223 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.949 |
| nusA | uppS | AMC85_CH00156 | AMC85_CH02038 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | Undecaprenyl pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.812 |
| nusG | ANL57591.1 | AMC85_CH01735 | AMC85_CH00148 | Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination. | Protein involved in methyltransferase activity and methylation; Belongs to the methyltransferase superfamily. | 0.535 |
| nusG | nusA | AMC85_CH01735 | AMC85_CH00156 | Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination. | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | 0.995 |
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