Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpaEFlp pilus assembly ATP-binding protein CpaE. (425 aa)    
Predicted Functional Partners:
cpaB-1
Flp pilus assembly protein CpaB 1.
 
 
 0.999
ANL57694.1
Type II secretion system F domain-containing protein.
 
 
 0.999
cpaC-1
Flp pilus assembly secretion protein CpaC 1; Protein involved in protein secretion; Belongs to the bacterial secretin family.
 
 
 0.998
ANL57695.1
Type II secretion system F domain-containing protein.
 
 
 0.998
cpaF-1
Flp pilus assembly ATP-binding protein CpaF 1; Protein involved in ATP binding and transport.
 
 
 0.997
ANL57685.1
Flp pilus assembly TadG-like protein; Overlaps another CDS with the same product name.
 
  
 0.975
ANL57687.1
Flp/Fap pilin component protein.
 
  
 0.956
ANL57688.1
Protein involved in aspartic-type endopeptidase activity.
 
  
 0.954
cpaD
Pilus biogenesis protein CpaD.
 
     0.950
ANL57686.1
Pilus formation domain-containing protein.
 
  
 0.948
Your Current Organism:
Rhizobium phaseoli
NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli
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