STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANL57902.1RNA polymerase sigma-70 factor SigK-like protein; Protein involved in DNA binding, sequence-specific DNA binding transcription factor activity, sigma factor activity, transcription initiation, DNA-dependent and regulation of transcription, DNA-dependent; Belongs to the sigma-70 factor family. ECF subfamily. (179 aa)    
Predicted Functional Partners:
ANL57903.1
Anti-sigma K factor RskA-like protein.
 
 
 
 0.950
ANL59258.1
ChrR family anti-sigma factor protein.
 
 
 0.834
rpoE-2
RNA polymerase sigma-24 factor RpoE 2; Protein involved in DNA binding, sequence-specific DNA binding transcription factor activity, sigma factor activity, transcription initiation, DNA-dependent and regulation of transcription, DNA-dependent; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.710
ANL57904.1
Fasciclin domain-containing protein.
 
  
 0.696
rpoE-1
RNA polymerase sigma-24 factor RpoE 1; Protein involved in DNA binding, sequence-specific DNA binding transcription factor activity, sigma factor activity, transcription initiation, DNA-dependent and regulation of transcription, DNA-dependent; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.681
ANL60789.1
RNA polymerase sigma factor protein; Protein involved in DNA binding, sequence-specific DNA binding transcription factor activity, sigma factor activity, transcription initiation, DNA-dependent and regulation of transcription, DNA-dependent; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.668
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.646
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.611
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
     
 0.567
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.559
Your Current Organism:
Rhizobium phaseoli
NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.