ANL58193.1 protein (Rhizobium phaseoli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Rhizobium phaseoli

NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANL58192.1	ANL58193.1	AMC85_CH00769	AMC85_CH00770	Outer membrane AsmA-like protein.	acetoacetyl-CoA synthetase protein; Protein involved in acetoacetate-CoA ligase activity and lipid metabolic process.	0.496
ANL58193.1	ANL58192.1	AMC85_CH00770	AMC85_CH00769	acetoacetyl-CoA synthetase protein; Protein involved in acetoacetate-CoA ligase activity and lipid metabolic process.	Outer membrane AsmA-like protein.	0.496
ANL58193.1	bdhA	AMC85_CH00770	AMC85_CH03271	acetoacetyl-CoA synthetase protein; Protein involved in acetoacetate-CoA ligase activity and lipid metabolic process.	3-hydroxybutyrate dehydrogenase; Protein involved in nucleotide binding and oxidation-reduction process.	0.919
ANL58193.1	fadA	AMC85_CH00770	AMC85_CH00601	acetoacetyl-CoA synthetase protein; Protein involved in acetoacetate-CoA ligase activity and lipid metabolic process.	acetyl-CoA C-acetyltransferase; Protein involved in transferase activity, transferring acyl groups other than amino-acyl groups and metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	0.923
ANL58193.1	fadB	AMC85_CH00770	AMC85_CH00394	acetoacetyl-CoA synthetase protein; Protein involved in acetoacetate-CoA ligase activity and lipid metabolic process.	enoyl-CoA hydratase; Protein involved in catalytic activity and metabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	0.748
ANL58193.1	fadJ	AMC85_CH00770	AMC85_CH00602	acetoacetyl-CoA synthetase protein; Protein involved in acetoacetate-CoA ligase activity and lipid metabolic process.	Fatty acid oxidation complex subunit alpha FadJ; Protein involved in nucleotide binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, coenzyme binding and oxidation-reduction process.	0.935
ANL58193.1	fumA	AMC85_CH00770	AMC85_CH02473	acetoacetyl-CoA synthetase protein; Protein involved in acetoacetate-CoA ligase activity and lipid metabolic process.	Fumarate hydratase class 1; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.558
ANL58193.1	hbdA-2	AMC85_CH00770	AMC85_CH03978	acetoacetyl-CoA synthetase protein; Protein involved in acetoacetate-CoA ligase activity and lipid metabolic process.	3-hydroxybutyryl-CoA dehydrogenase 2; Protein involved in 3-hydroxyacyl-CoA dehydrogenase activity, NAD+ binding, coenzyme binding, fatty acid metabolic process and oxidation-reduction process.	0.913
ANL58193.1	phaR	AMC85_CH00770	AMC85_CH04287	acetoacetyl-CoA synthetase protein; Protein involved in acetoacetate-CoA ligase activity and lipid metabolic process.	Polyhydroxyalkanoate synthesis repressor PhaR.	0.566
ANL58193.1	phbA	AMC85_CH00770	AMC85_CH04288	acetoacetyl-CoA synthetase protein; Protein involved in acetoacetate-CoA ligase activity and lipid metabolic process.	acetyl-CoA acetyltransferase; Protein involved in transferase activity, transferring acyl groups other than amino-acyl groups and metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	0.930
ANL58193.1	phbB	AMC85_CH00770	AMC85_CH04289	acetoacetyl-CoA synthetase protein; Protein involved in acetoacetate-CoA ligase activity and lipid metabolic process.	acetoacetyl-CoA reductase; Protein involved in nucleotide binding, poly-hydroxybutyrate biosynthetic process and oxidation-reduction process.	0.912
bdhA	ANL58193.1	AMC85_CH03271	AMC85_CH00770	3-hydroxybutyrate dehydrogenase; Protein involved in nucleotide binding and oxidation-reduction process.	acetoacetyl-CoA synthetase protein; Protein involved in acetoacetate-CoA ligase activity and lipid metabolic process.	0.919
fadA	ANL58193.1	AMC85_CH00601	AMC85_CH00770	acetyl-CoA C-acetyltransferase; Protein involved in transferase activity, transferring acyl groups other than amino-acyl groups and metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	acetoacetyl-CoA synthetase protein; Protein involved in acetoacetate-CoA ligase activity and lipid metabolic process.	0.923
fadA	fadB	AMC85_CH00601	AMC85_CH00394	acetyl-CoA C-acetyltransferase; Protein involved in transferase activity, transferring acyl groups other than amino-acyl groups and metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	enoyl-CoA hydratase; Protein involved in catalytic activity and metabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	0.971
fadA	fadJ	AMC85_CH00601	AMC85_CH00602	acetyl-CoA C-acetyltransferase; Protein involved in transferase activity, transferring acyl groups other than amino-acyl groups and metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	Fatty acid oxidation complex subunit alpha FadJ; Protein involved in nucleotide binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, coenzyme binding and oxidation-reduction process.	0.999
fadA	fumA	AMC85_CH00601	AMC85_CH02473	acetyl-CoA C-acetyltransferase; Protein involved in transferase activity, transferring acyl groups other than amino-acyl groups and metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	Fumarate hydratase class 1; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.436
fadA	hbdA-2	AMC85_CH00601	AMC85_CH03978	acetyl-CoA C-acetyltransferase; Protein involved in transferase activity, transferring acyl groups other than amino-acyl groups and metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxybutyryl-CoA dehydrogenase 2; Protein involved in 3-hydroxyacyl-CoA dehydrogenase activity, NAD+ binding, coenzyme binding, fatty acid metabolic process and oxidation-reduction process.	0.996
fadA	phbA	AMC85_CH00601	AMC85_CH04288	acetyl-CoA C-acetyltransferase; Protein involved in transferase activity, transferring acyl groups other than amino-acyl groups and metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA acetyltransferase; Protein involved in transferase activity, transferring acyl groups other than amino-acyl groups and metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	0.916
fadA	phbB	AMC85_CH00601	AMC85_CH04289	acetyl-CoA C-acetyltransferase; Protein involved in transferase activity, transferring acyl groups other than amino-acyl groups and metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	acetoacetyl-CoA reductase; Protein involved in nucleotide binding, poly-hydroxybutyrate biosynthetic process and oxidation-reduction process.	0.918
fadB	ANL58193.1	AMC85_CH00394	AMC85_CH00770	enoyl-CoA hydratase; Protein involved in catalytic activity and metabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	acetoacetyl-CoA synthetase protein; Protein involved in acetoacetate-CoA ligase activity and lipid metabolic process.	0.748