ANL58364.1 protein (Rhizobium phaseoli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ANL58364.1

SAM-dependent methyltransferase protein; Belongs to the methyltransferase superfamily. (264 aa)

Predicted Functional Partners:

ANL58363.1

0.794

ispB

0.583

rsmI

0.569

ANL58361.1

0.553

rimP

0.488

ANL58922.1

0.484

ANL57549.1

0.463

ANL60405.1

0.463

ANL59739.1

0.440

rpsT

0.422

Your Current Organism:

Rhizobium phaseoli

NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANL57549.1	ANL58363.1	AMC85_CH00106	AMC85_CH00944	Excinuclease ABC subunit C domain-containing protein; Protein involved in nuclease activity and DNA repair.	Urease accessory domain-containing protein; Protein involved in nickel cation binding, protein complex assembly and urea metabolic process.	0.463
ANL57549.1	ANL58364.1	AMC85_CH00106	AMC85_CH00945	Excinuclease ABC subunit C domain-containing protein; Protein involved in nuclease activity and DNA repair.	SAM-dependent methyltransferase protein; Belongs to the methyltransferase superfamily.	0.463
ANL57549.1	rsmI	AMC85_CH00106	AMC85_CH00357	Excinuclease ABC subunit C domain-containing protein; Protein involved in nuclease activity and DNA repair.	Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.	0.461
ANL58361.1	ANL58363.1	AMC85_CH00942	AMC85_CH00944	Tetratricopeptide repeat-containing protein; Protein involved in binding.	Urease accessory domain-containing protein; Protein involved in nickel cation binding, protein complex assembly and urea metabolic process.	0.416
ANL58361.1	ANL58364.1	AMC85_CH00942	AMC85_CH00945	Tetratricopeptide repeat-containing protein; Protein involved in binding.	SAM-dependent methyltransferase protein; Belongs to the methyltransferase superfamily.	0.553
ANL58361.1	ANL59739.1	AMC85_CH00942	AMC85_CH02366	Tetratricopeptide repeat-containing protein; Protein involved in binding.	AsmA-like domain-containing protein.	0.435
ANL58361.1	ispB	AMC85_CH00942	AMC85_CH00943	Tetratricopeptide repeat-containing protein; Protein involved in binding.	Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.	0.560
ANL58363.1	ANL57549.1	AMC85_CH00944	AMC85_CH00106	Urease accessory domain-containing protein; Protein involved in nickel cation binding, protein complex assembly and urea metabolic process.	Excinuclease ABC subunit C domain-containing protein; Protein involved in nuclease activity and DNA repair.	0.463
ANL58363.1	ANL58361.1	AMC85_CH00944	AMC85_CH00942	Urease accessory domain-containing protein; Protein involved in nickel cation binding, protein complex assembly and urea metabolic process.	Tetratricopeptide repeat-containing protein; Protein involved in binding.	0.416
ANL58363.1	ANL58364.1	AMC85_CH00944	AMC85_CH00945	Urease accessory domain-containing protein; Protein involved in nickel cation binding, protein complex assembly and urea metabolic process.	SAM-dependent methyltransferase protein; Belongs to the methyltransferase superfamily.	0.794
ANL58363.1	ANL60405.1	AMC85_CH00944	AMC85_CH03050	Urease accessory domain-containing protein; Protein involved in nickel cation binding, protein complex assembly and urea metabolic process.	Excinuclease ABC subunit C domain-containing protein; Protein involved in nuclease activity and DNA repair.	0.463
ANL58363.1	ispB	AMC85_CH00944	AMC85_CH00943	Urease accessory domain-containing protein; Protein involved in nickel cation binding, protein complex assembly and urea metabolic process.	Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.	0.583
ANL58363.1	rsmI	AMC85_CH00944	AMC85_CH00357	Urease accessory domain-containing protein; Protein involved in nickel cation binding, protein complex assembly and urea metabolic process.	Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.	0.569
ANL58364.1	ANL57549.1	AMC85_CH00945	AMC85_CH00106	SAM-dependent methyltransferase protein; Belongs to the methyltransferase superfamily.	Excinuclease ABC subunit C domain-containing protein; Protein involved in nuclease activity and DNA repair.	0.463
ANL58364.1	ANL58361.1	AMC85_CH00945	AMC85_CH00942	SAM-dependent methyltransferase protein; Belongs to the methyltransferase superfamily.	Tetratricopeptide repeat-containing protein; Protein involved in binding.	0.553
ANL58364.1	ANL58363.1	AMC85_CH00945	AMC85_CH00944	SAM-dependent methyltransferase protein; Belongs to the methyltransferase superfamily.	Urease accessory domain-containing protein; Protein involved in nickel cation binding, protein complex assembly and urea metabolic process.	0.794
ANL58364.1	ANL58922.1	AMC85_CH00945	AMC85_CH01512	SAM-dependent methyltransferase protein; Belongs to the methyltransferase superfamily.	YjgP/YjgQ family permease protein; Overlaps another CDS with the same product name.	0.484
ANL58364.1	ANL59739.1	AMC85_CH00945	AMC85_CH02366	SAM-dependent methyltransferase protein; Belongs to the methyltransferase superfamily.	AsmA-like domain-containing protein.	0.440
ANL58364.1	ANL60405.1	AMC85_CH00945	AMC85_CH03050	SAM-dependent methyltransferase protein; Belongs to the methyltransferase superfamily.	Excinuclease ABC subunit C domain-containing protein; Protein involved in nuclease activity and DNA repair.	0.463
ANL58364.1	ispB	AMC85_CH00945	AMC85_CH00943	SAM-dependent methyltransferase protein; Belongs to the methyltransferase superfamily.	Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.	0.583