ANL58397.1 protein (Rhizobium phaseoli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Rhizobium phaseoli

NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANL58397.1	ANL58399.1	AMC85_CH00978	AMC85_CH00980	tRNA (uracil-5-)-methyltransferase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Protein involved in signal transducer activity, chemotaxis and signal transduction.	0.468
ANL58397.1	guaA	AMC85_CH00978	AMC85_CH00335	tRNA (uracil-5-)-methyltransferase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	0.549
ANL58397.1	pheT	AMC85_CH00978	AMC85_CH00302	tRNA (uracil-5-)-methyltransferase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	phenylalanyl-tRNA synthetase subunit beta; Protein involved in nucleotide binding, RNA binding, ATP binding, phenylalanyl-tRNA aminoacylation and tRNA processing; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.489
ANL58397.1	pyrG	AMC85_CH00978	AMC85_CH02267	tRNA (uracil-5-)-methyltransferase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	CTP synthetase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.	0.457
ANL58397.1	rpoC	AMC85_CH00978	AMC85_CH01742	tRNA (uracil-5-)-methyltransferase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.524
ANL58397.1	rpsA	AMC85_CH00978	AMC85_CH00102	tRNA (uracil-5-)-methyltransferase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.509
ANL58397.1	rsmB	AMC85_CH00978	AMC85_CH04385	tRNA (uracil-5-)-methyltransferase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Ribosomal RNA small subunit methyltransferase B; Protein involved in RNA binding and regulation of transcription, DNA-dependent; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.497
ANL58397.1	tlyA	AMC85_CH00978	AMC85_CH00979	tRNA (uracil-5-)-methyltransferase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Hemolysin protein TlyA; Protein involved in RNA binding, methyltransferase activity and hemolysis by symbiont of host erythrocytes.	0.824
ANL58397.1	trmB	AMC85_CH00978	AMC85_CH00408	tRNA (uracil-5-)-methyltransferase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.583
ANL58397.1	yheS	AMC85_CH00978	AMC85_CH01527	tRNA (uracil-5-)-methyltransferase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	ABC transporter ATP-binding protein YheS; Protein involved in nucleotide binding and nucleoside-triphosphatase activity.	0.459
ANL58399.1	ANL58397.1	AMC85_CH00980	AMC85_CH00978	Protein involved in signal transducer activity, chemotaxis and signal transduction.	tRNA (uracil-5-)-methyltransferase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.468
ANL58399.1	tlyA	AMC85_CH00980	AMC85_CH00979	Protein involved in signal transducer activity, chemotaxis and signal transduction.	Hemolysin protein TlyA; Protein involved in RNA binding, methyltransferase activity and hemolysis by symbiont of host erythrocytes.	0.468
guaA	ANL58397.1	AMC85_CH00335	AMC85_CH00978	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	tRNA (uracil-5-)-methyltransferase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.549
guaA	pheT	AMC85_CH00335	AMC85_CH00302	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	phenylalanyl-tRNA synthetase subunit beta; Protein involved in nucleotide binding, RNA binding, ATP binding, phenylalanyl-tRNA aminoacylation and tRNA processing; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.908
guaA	pyrG	AMC85_CH00335	AMC85_CH02267	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	CTP synthetase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.	0.955
guaA	rpoC	AMC85_CH00335	AMC85_CH01742	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.908
guaA	rpsA	AMC85_CH00335	AMC85_CH00102	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.815
guaA	rsmB	AMC85_CH00335	AMC85_CH04385	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	Ribosomal RNA small subunit methyltransferase B; Protein involved in RNA binding and regulation of transcription, DNA-dependent; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.512
pheT	ANL58397.1	AMC85_CH00302	AMC85_CH00978	phenylalanyl-tRNA synthetase subunit beta; Protein involved in nucleotide binding, RNA binding, ATP binding, phenylalanyl-tRNA aminoacylation and tRNA processing; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	tRNA (uracil-5-)-methyltransferase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.489
pheT	guaA	AMC85_CH00302	AMC85_CH00335	phenylalanyl-tRNA synthetase subunit beta; Protein involved in nucleotide binding, RNA binding, ATP binding, phenylalanyl-tRNA aminoacylation and tRNA processing; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	0.908