Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pdxHPyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). (206 aa)    
Predicted Functional Partners:
pdxJ
Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
  
  
 0.942
pdxY
Protein involved in pyridoxal kinase activity and pyridoxal 5'-phosphate salvage; Belongs to the pyridoxine kinase family.
    
 0.925
ANL57921.1
Protein involved in oxidoreductase activity and oxidation-reduction process.
     
 0.900
ddlA
D-alanine--D-alanine ligase A; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
      
 0.752
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
      
 0.752
ANL58430.1
Hypothetical protein.
       0.571
pyrB
Aspartate carbamoyltransferase catalytic subunit; Protein involved in carboxyl- or carbamoyltransferase activity and cellular amino acid metabolic process; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
      0.530
ANL58866.1
MOSC domain-containing protein; Protein involved in catalytic activity, molybdenum ion binding and pyridoxal phosphate binding.
 
 
    0.528
carB
Carbamoyl phosphate synthetase large subunit; Protein involved in ATP binding, ligase activity and nitrogen compound metabolic process; Belongs to the CarB family.
 
  
 0.513
trpE(G)
Protein involved in anthranilate synthase activity and tryptophan biosynthetic process.
  
  
 0.502
Your Current Organism:
Rhizobium phaseoli
NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli
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